Welcome to LightWin’s documentation!

LightWin

• Installation
  • Download
  • Python (mandatory)
  • Cython setup (should be automatic)
  • TraceWin (facultative)
  • Testing
  • Troubleshooting
• Usage
  • General structure of the code
  • Breaking and fixing a linac
  • Compatibility with TraceWin DAT files
• The get method
• Configuration
  • files section (mandatory)
  • beam section (mandatory)
  • beam_calculator section (mandatory)
  • plots section (mandatory)
  • wtf section
  • optimisation.design_space section
  • evaluators section
• Units and conventions
• Utility scripts
• Bibliography
• API Reference
  • beam_calculation package
    • cy_envelope_1d package
      • beam_parameters_factory module
      • electromagnetic_fields module
      • element_parameters module
      • element_parameters_factory module
      • envelope_1d module
      • simulation_output_factory module
      • specs module
      • transfer_matrices module
      • transfer_matrix_factory module
      • util module
    • envelope_1d package
      • beam_parameters_factory module
      • element_envelope1d_parameters module
      • element_envelope1d_parameters_factory module
      • envelope_1d module
      • simulation_output_factory module
      • specs module
      • transfer_matrices module
      • transfer_matrix_factory module
      • util module
    • envelope_3d package
      • beam_parameters_factory module
      • element_envelope3d_parameters module
      • element_envelope3d_parameters_factory module
      • envelope_3d module
      • simulation_output_factory module
      • specs module
      • transfer_matrices_p module
      • transfer_matrix_factory module
      • util module
    • integrators package
      • rk4 module
    • parameters package
      • element_parameters module
      • factory module
    • simulation_output package
      • factory module
      • simulation_output module
    • tracewin package
      • beam_parameters_factory module
      • element_tracewin_parameters module
      • element_tracewin_parameters_factory module
      • machine_config_specs module
      • simulation_output_factory module
      • specs module
      • tracewin module
      • transfer_matrix_factory module
    • beam_calculator module
    • factory module
    • specs module
  • config package
    • config_manager module
    • full_specs module
    • helper module
    • key_val_conf_spec module
    • table_spec module
    • toml_formatter module
  • core package
    • accelerator package
      • accelerator module
      • factory module
    • beam_parameters package
      • phase_space package
        • i_phase_space_beam_parameters module
        • initial_phase_space_beam_parameters module
        • phase_space_beam_parameters module
      • beam_parameters module
      • factory module
      • helper module
      • initial_beam_parameters module
    • commands package
      • adjust module
      • chopper module
      • command module
      • dummy_command module
      • end module
      • error module
      • factory module
      • field_map_path module
      • freq module
      • helper module
      • lattice module
      • marker module
      • repeat_ele module
      • set_adv module
      • set_sync_phase module
      • shift module
      • steerer module
      • superpose_map module
    • elements package
      • field_maps package
        • cavity_settings module
        • cavity_settings_factory module
        • factory module
        • field_map module
        • field_map_100 module
        • field_map_1100 module
        • field_map_70 module
        • field_map_7700 module
        • superposed_field_map module
        • util module
      • aperture module
      • bend module
      • diagnostic module
      • drift module
      • dummy module
      • edge module
      • element module
      • factory module
      • helper module
      • quad module
      • solenoid module
      • superposed_field_map module
      • thin_steering module
    • em_fields package
      • field module
      • field100 module
      • field70 module
      • field_factory module
      • field_helpers module
      • helper module
      • longitudinal module
      • rf_field module
      • superposed_fields module
      • types module
    • list_of_elements package
      • factory module
      • helper module
      • list_of_elements module
    • transfer_matrix package
      • factory module
      • transfer_matrix module
    • beam_specs module
    • files_specs module
    • instruction module
    • instructions_factory module
    • particle module
  • evaluator package
    • simulation_output package
      • factory module
      • presets module
      • simulation_output_evaluator module
    • list_of_simulation_output_evaluators module
    • post_treaters module
    • specs module
    • testers module
    • types module
  • failures package
    • fault module
    • fault_scenario module
    • helper module
    • set_of_cavity_settings module
    • strategy module
  • optimisation package
    • algorithms package
      • algorithm module
      • differential_evolution module
      • downhill_simplex module
      • downhill_simplex_penalty module
      • explorator module
      • factory module
      • least_squares module
      • least_squares_penalty module
      • nsga module
      • pso module
    • design_space package
      • constraint module
      • design_space module
      • design_space_parameter module
      • factory module
      • helper module
      • variable module
    • objective package
      • factory module
      • helper module
      • minimize_difference_with_ref module
      • minimize_mismatch module
      • objective module
      • position module
      • quantity_is_between module
    • design_space_specs module
    • wtf_specs module
  • scripts package
    • combine_solutions module
    • compare_beam_calculators module
    • compare_runs module
    • compute_lost_power_per_meter module
    • generate_design_space_files module
    • optimization_history module
    • reorder_output_figures module
    • save_cavity_settings module
    • scripts_shorthands module
  • tracewin_utils package
    • dat_files module
    • electromagnetic_fields module
    • field_map_loaders module
    • interface module
    • line module
    • load module
  • ui package
    • workflow_setup module
  • util package
    • converters module
    • debug module
    • dicts_output module
    • helper module
    • log_manager module
    • pandas_helper module
    • pass_beauty module
    • phases module
    • pickling module
    • synchronous_phases module
  • visualization package
    • anim module
    • ellipse module
    • helper module
    • optimization module
    • plot module
    • specs module
    • structure module
  • config_manager module
  • constants module
• Examples
  • Absolute and relative cavity entry phases

Todo

Precise that BeamParametersFactory and TransferMatrixFactory are mandatory.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/beam_calculator.py:docstring of lightwin.beam_calculation.beam_calculator, line 8.)

Todo

default_field_map_folder has a wrong default value. Should take path to the .dat file, that is not known at this point. Maybe handle this directly in the InstructionsFactory or whatever.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/beam_calculator.py:docstring of lightwin.beam_calculation.beam_calculator.BeamCalculator._set_up_common_factories, line 3.)

Todo

update_reference_phase is currently unused, because it is not useful once the propagation has been calculated. So… should I keep it? Maybe it can be useful in post_optimisation_run_with_this, or in scripts to convert the phase between the different references, or when I want to save the .dat?

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/beam_calculator.py:docstring of lightwin.beam_calculation.beam_calculator.BeamCalculator.run, line 3.)

Todo

Handle reference synchronous phase.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/beam_calculator.py:docstring of lightwin.beam_calculation.beam_calculator.BeamCalculator.reference_phase, line 3.)

Todo

I think that this module could be greatly enhanced. I am not a Cython specialist and suggestions are welcome.

(The original entry is located in docstring of lightwin.beam_calculation.cy_envelope_1d.transfer_matrices, line 6.)

Todo

Field maps better to create the transfer matrix in one passage at the end?

(The original entry is located in docstring of lightwin.beam_calculation.cy_envelope_1d.transfer_matrices, line 10.)

Todo

the passing of the field maps is not clean at all

(The original entry is located in docstring of lightwin.beam_calculation.cy_envelope_1d.transfer_matrices, line 13.)

Todo

Patch in transfer matrix to get proper input transfer matrix. In future, input beam will not hold transf mat in anymore.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/envelope_1d/simulation_output_factory.py:docstring of lightwin.beam_calculation.envelope_1d.simulation_output_factory.SimulationOutputFactoryEnvelope1D.run, line 3.)

Todo

Possible to use only lists here. May speed up the code, especially in _c. But numpy is fast, no?

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/envelope_1d/transfer_matrices.py:docstring of lightwin.beam_calculation.envelope_1d.transfer_matrices, line 6.)

Todo

send beta as argument to avoid recomputing it each time

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/envelope_1d/transfer_matrices.py:docstring of lightwin.beam_calculation.envelope_1d.transfer_matrices, line 10.)

Todo

Use e_func_complex() in z_field_map_rk4()?

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/envelope_1d/transfer_matrices.py:docstring of lightwin.beam_calculation.envelope_1d.transfer_matrices, line 13.)

Todo

electric field interpolated twice: a first time for acceleration, and a second time to iterate itg_field. Maybe this could be done only once.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/envelope_1d/transfer_matrices.py:docstring of lightwin.beam_calculation.envelope_1d.transfer_matrices, line 16.)

Todo

clean, fix, separate leapfrog integration in dedicated module

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/envelope_1d/transfer_matrices.py:docstring of lightwin.beam_calculation.envelope_1d.transfer_matrices.z_field_map_leapfrog, line 3.)

Todo

Patch in transfer matrix to get proper input transfer matrix. In future, input beam will not hold transf mat in anymore.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/envelope_3d/simulation_output_factory.py:docstring of lightwin.beam_calculation.envelope_3d.simulation_output_factory.SimulationOutputFactoryEnvelope3D.run, line 3.)

Todo

3D field maps?

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/envelope_3d/transfer_matrices_p.py:docstring of lightwin.beam_calculation.envelope_3d.transfer_matrices_p, line 6.)

Todo

Maybe it would be clearer to compose r_xx, r_yy, r_zz. As an example, the zz_drift is used in several places.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/envelope_3d/transfer_matrices_p.py:docstring of lightwin.beam_calculation.envelope_3d.transfer_matrices_p, line 9.)

Todo

Will be necessary to separate this module into several sub-packages

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/envelope_3d/transfer_matrices_p.py:docstring of lightwin.beam_calculation.envelope_3d.transfer_matrices_p, line 13.)

Todo

more math, less numpy. look at envelope 1d version

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/envelope_3d/transfer_matrices_p.py:docstring of lightwin.beam_calculation.envelope_3d.transfer_matrices_p, line 16.)

Todo

As I am working on floats and not on np arrays, maybe the functions from the cmath package would be more adapted?

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/envelope_3d/transfer_matrices_p.py:docstring of lightwin.beam_calculation.envelope_3d.transfer_matrices_p._quadrupole_trigo_hyperbolic, line 3.)

Todo

fixme

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/factory.py:docstring of lightwin.beam_calculation.factory.BeamCalculatorsFactory._patch_to_remove_misunderstood_key, line 3.)

Todo

different functions, for different outputs. At least, an _element_to_index and a _element_to_indexes. And also a different function for when the index element is desired.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/simulation_output/factory.py:docstring of lightwin.beam_calculation.simulation_output.factory._element_to_index, line 7.)

Todo

Do I really need the r_zz_elt key??

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/simulation_output/simulation_output.py:docstring of lightwin.beam_calculation.simulation_output.simulation_output, line 3.)

Todo

Do I really need z_abs? Envelope1D does not uses it while TraceWin does.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/simulation_output/simulation_output.py:docstring of lightwin.beam_calculation.simulation_output.simulation_output, line 6.)

Todo

Transfer matrices are stored in TransferMatrix, but also in BeamParameters.zdelta.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/simulation_output/simulation_output.py:docstring of lightwin.beam_calculation.simulation_output.simulation_output, line 9.)

Todo

Maybe the synchronous phase model should appear somewhere in here?

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/simulation_output/simulation_output.py:docstring of lightwin.beam_calculation.simulation_output.simulation_output, line 13.)

Todo

Fix output_data_in_tw_fashion

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/simulation_output/simulation_output.py:docstring of lightwin.beam_calculation.simulation_output.simulation_output.SimulationOutput.compute_complementary_data, line 3.)

Todo

normalized or not???

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/tracewin/beam_parameters_factory.py:docstring of lightwin.beam_calculation.tracewin.beam_parameters_factory.BeamParametersFactoryTraceWin._extract_emittance_for_99percent, line 3.)

Todo

fix possible unbound error for n_columns.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/tracewin/simulation_output_factory.py:docstring of lightwin.beam_calculation.tracewin.simulation_output_factory._remove_incomplete_line, line 3.)

Todo

another possibly unbound error to handle

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/tracewin/simulation_output_factory.py:docstring of lightwin.beam_calculation.tracewin.simulation_output_factory._add_dummy_data, line 6.)

Todo

Handle args such as hide.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/tracewin/specs.py:docstring of lightwin.beam_calculation.tracewin.specs, line 3.)

Todo

This absolute phase thing should be fixed now. Check this.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/tracewin/tracewin.py:docstring of lightwin.beam_calculation.tracewin.tracewin, line 16.)

Todo

Maybe I should also store the synchronous phase?

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/beam_calculation/tracewin/tracewin.py:docstring of lightwin.beam_calculation.tracewin.tracewin.TraceWin._save_cavities_entry_phases, line 8.)

Todo

Method to generate the .csv files of documentation from the tables, i.e. docs/manual/configuration_entries

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/config/config_manager.py:docstring of lightwin.config.config_manager, line 3.)

Todo

Not Pythonic at all.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/config/table_spec.py:docstring of lightwin.config.table_spec._remove_overriden_keys, line 3.)

Todo

Method to generate the .csv files of documentation from the tables, i.e. docs/manual/configuration_entries

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/config_manager.py:docstring of lightwin.config_manager, line 3.)

Todo

Compute_transfer_matrices: simplify, add a calculation of missing phi_0 at the end

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/accelerator/accelerator.py:docstring of lightwin.core.accelerator.accelerator, line 9.)

Todo

Remove tracewin command from BeamParameters

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/beam_parameters/__init__.py:docstring of lightwin.core.beam_parameters, line 6.)

Todo

Remove the is_3d, is_multipart as I always create the same object with True, True.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/beam_parameters/factory.py:docstring of lightwin.core.beam_parameters.factory.InitialBeamParametersFactory, line 5.)

Todo

Would be better if all emittances had the same units? Check consistency with rest of the code…

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/beam_parameters/helper.py:docstring of lightwin.core.beam_parameters.helper.twiss_from_sigma, line 9.)

Todo

Could be cleaner.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/beam_parameters/initial_beam_parameters.py:docstring of lightwin.core.beam_parameters.initial_beam_parameters.InitialBeamParameters.sigma, line 3.)

Todo

How should I save the min/max variables?? For now, use None.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/commands/adjust.py:docstring of lightwin.core.commands.adjust, line 8.)

Todo

handle personalized name of commands (marker)

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/commands/factory.py:docstring of lightwin.core.commands.factory, line 3.)

Todo

Check if it would be relatable to hold some arguments? As for now, I would be better off with a run function instead of a class.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/commands/factory.py:docstring of lightwin.core.commands.factory.CommandFactory.__init__, line 3.)

Todo

As for now, the effect of this command will be overriden by the _force_a_lattice_for_every_element. See how I should handle this…

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/commands/lattice.py:docstring of lightwin.core.commands.lattice.LatticeEnd.apply, line 3.)

Todo

Should also modify RFQ_CEL, CAVSIN, NCELLS according to doc.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/commands/set_sync_phase.py:docstring of lightwin.core.commands.set_sync_phase, line 3.)

Todo

Check behavior w.r.t. LATTICE.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/elements/edge.py:docstring of lightwin.core.elements.edge, line 3.)

Todo

clean the patch for the ‘name’. my has and get methods do not work with @property

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/elements/element.py:docstring of lightwin.core.elements.element, line 3.)

Todo

Similar to synchronous phase, allow for V_cav to be “master” instead of k_e.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/elements/field_maps/cavity_settings.py:docstring of lightwin.core.elements.field_maps.cavity_settings, line 7.)

Todo

Which syntax for when I want to compute the value of a property but not return it? Maybe a _ = self.phi_0_abs? Maybe this case should not appear here, appart for when I debug.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/elements/field_maps/cavity_settings.py:docstring of lightwin.core.elements.field_maps.cavity_settings.CavitySettings, line 3.)

Todo

Determine if status should be kept here or in the field map.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/elements/field_maps/cavity_settings.py:docstring of lightwin.core.elements.field_maps.cavity_settings.CavitySettings, line 11.)

Todo

For TraceWin solver, I will also need the field map index.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/elements/field_maps/cavity_settings.py:docstring of lightwin.core.elements.field_maps.cavity_settings.CavitySettings, line 14.)

Todo

Maybe not necessary to raise an error when there is a mismatch.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/elements/field_maps/cavity_settings.py:docstring of lightwin.core.elements.field_maps.cavity_settings.CavitySettings._check_consistency_of_status_and_reference, line 3.)

Todo

This will be subclassed, as the different solvers do not have the same needs. TraceWin does not need to load the electromagnetic fields, so every FIELD_MAP is implemented. Envelope1D cannot support 3D. etc

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/elements/field_maps/factory.py:docstring of lightwin.core.elements.field_maps.factory, line 6.)

Todo

Handle the different kind of field_maps…

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/elements/field_maps/field_map.py:docstring of lightwin.core.elements.field_maps.field_map, line 3.)

Todo

Completely handle the SET_SYNCH_PHASE command

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/elements/field_maps/field_map.py:docstring of lightwin.core.elements.field_maps.field_map, line 6.)

Todo

Hande phi_s fitting with TraceWin.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/elements/field_maps/field_map.py:docstring of lightwin.core.elements.field_maps.field_map, line 9.)

Todo

Could be cleaned and simplified.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/elements/field_maps/superposed_field_map.py:docstring of lightwin.core.elements.field_maps.superposed_field_map, line 7.)

Todo

Remove idx in lattice, lattice, section arguments. can take this from new attribute: field_maps.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/elements/field_maps/superposed_field_map.py:docstring of lightwin.core.elements.field_maps.superposed_field_map.SuperposedFieldMap, line 7.)

Todo

Define a FieldMapLoader function to easily choose between binary/ascii file format.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/em_fields/field.py:docstring of lightwin.core.em_fields.field, line 6.)

Todo

Should have a omega0_rf attribute

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/em_fields/field.py:docstring of lightwin.core.em_fields.field, line 10.)

Todo

Implement SuperposedFieldMap.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/em_fields/field_factory.py:docstring of lightwin.core.em_fields.field_factory, line 3.)

Todo

The line is edited to remove personalized name, weight and always have the same arguments at the same position. But after I shall re-add them with reinsert_optional_commands_in_line. This is very patchy and un-Pythonic.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/instruction.py:docstring of lightwin.core.instruction, line 3.)

Todo

Instantiate this in BeamCalculator. It could be initialized with the load_electromagnetic_files flag (False for TraceWin), the list of implemented elements/commands (ex Envelope3D, not everything is set).

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/instructions_factory.py:docstring of lightwin.core.instructions_factory, line 3.)

Todo

maybe ElementFactory and CommandFactory should be instantiated from this? Or from another class, but they do have a lot in common

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/instructions_factory.py:docstring of lightwin.core.instructions_factory, line 8.)

Todo

for now, forcing loading of cython field maps

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/instructions_factory.py:docstring of lightwin.core.instructions_factory, line 12.)

Todo

Check if the return value from apply_commands is necessary.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/instructions_factory.py:docstring of lightwin.core.instructions_factory.InstructionsFactory.run, line 3.)

Todo

Also handle .dst file in subset_list_run().

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/list_of_elements/factory.py:docstring of lightwin.core.list_of_elements.factory, line 11.)

Todo

Maybe it will be necessary to handle cases where the synch particle is not perfectly on the axis?

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/list_of_elements/factory.py:docstring of lightwin.core.list_of_elements.factory, line 14.)

Todo

Find a smart way to sublass ListOfElementsFactory according to the BeamCalculator… Loading field maps not necessary with TraceWin for example.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/list_of_elements/factory.py:docstring of lightwin.core.list_of_elements.factory, line 18.)

Todo

The elements_to_dump key should be in the configuration file

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/list_of_elements/factory.py:docstring of lightwin.core.list_of_elements.factory, line 23.)

Todo

Maybe gather some things with the subset?

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/list_of_elements/factory.py:docstring of lightwin.core.list_of_elements.factory.ListOfElementsFactory.from_existing_list, line 7.)

Todo

Filtering consistency.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/list_of_elements/helper.py:docstring of lightwin.core.list_of_elements.helper, line 3.)

Todo

Delete dat_filecontent, which does the same thing as elts_n_cmds but less good

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/list_of_elements/list_of_elements.py:docstring of lightwin.core.list_of_elements.list_of_elements, line 10.)

Todo

Check if it can be more efficient. Maybe store R_xx, R_yy, R_zz separately?

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/transfer_matrix/transfer_matrix.py:docstring of lightwin.core.transfer_matrix.transfer_matrix, line 3.)

Todo

Maybe transfer matrices should always be (6, 6)??

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/transfer_matrix/transfer_matrix.py:docstring of lightwin.core.transfer_matrix.transfer_matrix, line 6.)

Todo

_init_from methods in factory???

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/transfer_matrix/transfer_matrix.py:docstring of lightwin.core.transfer_matrix.transfer_matrix, line 9.)

Todo

The SimulationOutput.get method with transfer matrix components fails with TraceWin solver.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/core/transfer_matrix/transfer_matrix.py:docstring of lightwin.core.transfer_matrix.transfer_matrix, line 12.)

Todo

maybe create a mother class more generic, also for FaultScenarioEvaluator?

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/evaluator/simulation_output/factory.py:docstring of lightwin.evaluator.simulation_output.factory, line 3.)

Todo

Only one reference for the existing evaluators. Here or the configuration module. Here would be better, as configuration handling will evolve.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/evaluator/simulation_output/presets.py:docstring of lightwin.evaluator.simulation_output.presets, line 10.)

Todo

different factories for evaluation during the fit and evaluation after

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/evaluator/simulation_output/simulation_output_evaluator.py:docstring of lightwin.evaluator.simulation_output.simulation_output_evaluator, line 7.)

Todo

Clean this.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/evaluator/simulation_output/simulation_output_evaluator.py:docstring of lightwin.evaluator.simulation_output.simulation_output_evaluator, line 10.)

Todo

not clear what happens here. separate __init__ in several functions

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/failures/fault.py:docstring of lightwin.failures.fault, line 5.)

Todo

store DesignSpace as attribute rather than Variable Constraint compute_constraints

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/failures/fault.py:docstring of lightwin.failures.fault, line 8.)

Todo

Could be cleaner.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/failures/fault_scenario.py:docstring of lightwin.failures.fault_scenario.FaultScenario.__init__, line 3.)

Todo

make this more readable

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/failures/fault_scenario.py:docstring of lightwin.failures.fault_scenario.FaultScenario.fix_all, line 3.)

Todo

I should create a SetOfCavitySettings with CavitySettings for every cavity of the compensation zone. Mandatory to recompute the synchronous phases.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/failures/set_of_cavity_settings.py:docstring of lightwin.failures.set_of_cavity_settings, line 3.)

Todo

Should create the full SetOfCavitySettings directly from the OptimisationAlgorithm. For now, the OptimisationAlgorithm creates a first SetOfCavitySettings. Then, the BeamCalculator calls this method to generate a new SetOfCavitySettings. Ugly, especially given the fact that OptimisationAlgorithm has its ListOfElements.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/failures/set_of_cavity_settings.py:docstring of lightwin.failures.set_of_cavity_settings.SetOfCavitySettings.from_incomplete_set, line 14.)

Todo

Check if it is necessary to pass out the whole elts to OptimisationAlgorithm?

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/optimisation/algorithms/algorithm.py:docstring of lightwin.optimisation.algorithms.algorithm, line 9.)

Todo

Methods and flags to keep the optimisation history or not, and also to save it or not. See Explorator.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/optimisation/algorithms/algorithm.py:docstring of lightwin.optimisation.algorithms.algorithm, line 13.)

Todo

Better handling of the attribute folder. In particular, a correct value should be set at the OptimisationAlgorithm instanciation.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/optimisation/algorithms/algorithm.py:docstring of lightwin.optimisation.algorithms.algorithm, line 17.)

Todo

Make this class more robust. In particular: save all objectives (not just the norm), handle export when there is more than two variables, also save complementary data (e.g.: always save phi_s even it is not in the constraints nor variables).

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/optimisation/algorithms/explorator.py:docstring of lightwin.optimisation.algorithms.explorator, line 7.)

Todo

Allow for different number of points according to variable.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/optimisation/algorithms/explorator.py:docstring of lightwin.optimisation.algorithms.explorator, line 13.)

Todo

Docstrings

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/optimisation/algorithms/factory.py:docstring of lightwin.optimisation.algorithms.factory, line 3.)

Todo

Redocument default_kwargs.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/optimisation/algorithms/factory.py:docstring of lightwin.optimisation.algorithms.factory._check_common_keys, line 3.)

Todo

Add support for when all element do not have the same variables/constraints.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/optimisation/design_space/design_space.py:docstring of lightwin.optimisation.design_space.design_space._from_file, line 3.)

Todo

decorator to auto output the variables and constraints?

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/optimisation/objective/factory.py:docstring of lightwin.optimisation.objective.factory, line 7.)

Todo

Allow from_file.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/optimisation/objective/factory.py:docstring of lightwin.optimisation.objective.factory.EnergySyncPhaseMismatch._get_phi_s, line 3.)

Todo

end_section, elt.name

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/optimisation/objective/position.py:docstring of lightwin.optimisation.objective.position, line 11.)

Todo

full_linac seems useless. Could be a strategy instead of an override setting. Would need to edit the ObjectiveFactory too.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/optimisation/objective/position.py:docstring of lightwin.optimisation.objective.position, line 14.)

Todo

Implement loss functions.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/optimisation/objective/quantity_is_between.py:docstring of lightwin.optimisation.objective.quantity_is_between, line 3.)

Todo

Some tests disappeared with the new config method… Checking the correct match of compensating manual for example

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/optimisation/wtf_specs.py:docstring of lightwin.optimisation.wtf_specs, line 3.)

Todo

Set up default arguments on example.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/scripts/__init__.py:docstring of lightwin.scripts, line 3.)

Todo

Allow for undetermined number of BeamCalculator in the config, and update here.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/scripts/compare_beam_calculators.py:docstring of lightwin.scripts.compare_beam_calculators, line 3.)

Todo

Sometimes the lost power in first row is 1e-10 or something? Check this out when I see it appear again.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/scripts/compute_lost_power_per_meter.py:docstring of lightwin.scripts.compute_lost_power_per_meter, line 3.)

Todo

May be included to post-processing from within LightWin directly

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/scripts/compute_lost_power_per_meter.py:docstring of lightwin.scripts.compute_lost_power_per_meter, line 7.)

Todo

Should they be in a module somewhere?

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/scripts/scripts_shorthands.py:docstring of lightwin.scripts.scripts_shorthands, line 3.)

Todo

Insert line skip at each section change in the output.dat

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/tracewin_utils/dat_files.py:docstring of lightwin.tracewin_utils.dat_files, line 3.)

Todo

some functions are not used anymore I guess…

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/tracewin_utils/electromagnetic_fields.py:docstring of lightwin.tracewin_utils.electromagnetic_fields, line 6.)

Todo

Better handling of the module import

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/tracewin_utils/electromagnetic_fields.py:docstring of lightwin.tracewin_utils.electromagnetic_fields, line 9.)

Todo

I think that this should be a method right? Different FieldMap objects -> different loading func?

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/tracewin_utils/electromagnetic_fields.py:docstring of lightwin.tracewin_utils.electromagnetic_fields.load_electromagnetic_fields, line 6.)

Todo

The eps_phiw is not correct. Does not match TraceWin (even if what I compute seems right). Check the zdelta -> phiw conversion.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/util/converters.py:docstring of lightwin.util.converters, line 3.)

Todo

Clean this, a lot of old things that may not be used.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/util/debug.py:docstring of lightwin.util.debug, line 3.)

Todo

Ellipse plot could be better

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/util/debug.py:docstring of lightwin.util.debug, line 6.)

Todo

Clean this, check what is still used.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/util/helper.py:docstring of lightwin.util.helper, line 3.)

Todo

Second example does not work

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/util/helper.py:docstring of lightwin.util.helper.pascal_case, line 3.)

Todo

fix colors in plots after pass beauty

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/util/pass_beauty.py:docstring of lightwin.util.pass_beauty, line 17.)

Todo

discriminate feasible from unfeasible solutions

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/visualization/anim.py:docstring of lightwin.visualization.anim, line 3.)

Todo

Isometric view of emittance along the linac. Possibility to visualize a single particle trajectory along the emittance. Visualization of the acceptance.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/visualization/ellipse.py:docstring of lightwin.visualization.ellipse, line 3.)

Todo

Information on the element under the cursor (hover).

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/visualization/optimization.py:docstring of lightwin.visualization.optimization, line 3.)

Todo

better detection of what is a multiparticle simulation and what is not. Currently looking for “‘partran’: 0” in the name of the solver, making the assumption that multipart is the default. But it depends on the .ini… update: just use .is_a_multiparticle_simulation

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/visualization/plot.py:docstring of lightwin.visualization.plot, line 3.)

Todo

Fix when there is only one accelerator to plot.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/visualization/plot.py:docstring of lightwin.visualization.plot, line 9.)

Todo

Different plot according to dimension of FieldMap, or according to if it accelerates or not (ex when quadrupole defined by a field map)

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/visualization/plot.py:docstring of lightwin.visualization.plot, line 12.)

Todo

Information on the objective under the cursor (hover).

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/envs/0.8.x/lib/python3.12/site-packages/lightwin/visualization/structure.py:docstring of lightwin.visualization.structure, line 3.)

Todo

A Jupyter Notebook would be better to show with examples.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/checkouts/0.8.x/docs/manual/get_method.rst, line 6.)

Todo

Consider providing more detailed instructions for setting the PYTHONPATH. For now, you can search for “PYTHONPATH” or “ModuleNotFoundError” online for additional guidance.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/checkouts/0.8.x/docs/manual/installation.python.rst, line 43.)

Todo

Allow for an easy way to skip Cython compilation.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/checkouts/0.8.x/docs/manual/installation.troubleshooting.rst, line 25.)

Todo

Consistency between font size of normal text and math text. Not aesthetic when I have text and units side to side.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/checkouts/0.8.x/docs/manual/units.rst, line 8.)

Todo

General units: MeV etc

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/checkouts/0.8.x/docs/manual/units.rst, line 11.)

Todo

Ease re-usage of old simulations. Very easy to implement, just use the recompute flag, override the run_with_this method, and user must provide a results directory.

(The original entry is located in /home/docs/checkouts/readthedocs.org/user_builds/lightwin/checkouts/0.8.x/docs/manual/usage.rst, line 11.)

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